Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Hdac3

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
liver
strain
C57B/6
tissue
liver
age
10 weeks old
gender
male
antibody
HDAC3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Livers were isolated, flash frozen on liquid nitrogen, and later processed for RNA extraction with Trizol, or fixed with 1% formaldehyde for ChIP. Libraries were prepared using standard Illumnia protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
40060367
Reads aligned (%)
91.5
Duplicates removed (%)
48.3
Number of peaks
14207 (qval < 1E-05)

mm9

Number of total reads
40060367
Reads aligned (%)
91.3
Duplicates removed (%)
48.4
Number of peaks
14182 (qval < 1E-05)

Base call quality data from DBCLS SRA